ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 285513.00 99.08 814.54 99.45 MIR22HG-212 lncRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 372.00 0.42 1.06 58.31 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 83901.00 95.35 239.36 97.09 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 266.00 0.30 0.76 41.69 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 643.00 78.70 1.83 100.0 ENST00000578036 lncRNA diencephalon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2161.00 88.86 6.17 100.0 RPL23A-207 protein coding diencephalon (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2214.00 90.92 6.32 100.0 MIR744-201 miRNA diencephalon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 69.00 66.35 0.20 100.0 MIR378C-201 miRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 41.00 1.29 0.12 3.63 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2214.00 69.43 6.32 73.92 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 2.00 0.06 0.01 100.0 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 727.00 4.99 2.07 100.0 SNORD3C-201 snoRNA diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 44.96 0.03 0.13 32.82 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 104892.00 81.18 299.25 90.8 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 22883.00 17.71 65.28 92.09 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 198.70 0.15 0.57 73.59 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 5.00 1.79 0.01 100.0 MIR133A1HG-202 lncRNA diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 11553.00 11.85 32.96 60.74 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 20239.00 20.75 57.74 76.64 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 276.00 0.28 0.79 100.0 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 29872.00 30.63 85.22 91.59 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 32328.00 33.15 92.23 94.83 RPL17-211 retained intron diencephalon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2751.00 44.83 7.85 71.57 ENST00000582320 lncRNA diencephalon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1531.00 24.95 4.37 100.0 ENST00000582320 lncRNA diencephalon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 502.00 8.18 1.43 100.0 ENST00000582320 lncRNA diencephalon (Tissue)