ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 67550.00 39.35 192.71 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1203.00 0.70 3.43 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 95816.00 55.81 273.35 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 723.00 98.91 2.06 100.0 TEKT4P2-201 transcribed unprocessed pseudogene diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 160325.00 96.33 457.39 99.24 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 218.00 0.13 0.62 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 107.00 0.06 0.31 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 21.00 0.01 0.06 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 579.00 0.35 1.65 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 2.00 0.01 0.01 100.0 ENST00000563103 lncRNA diencephalon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 118.00 2.48 0.34 100.0 RPL4-207 retained intron diencephalon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3258.00 68.56 9.29 100.0 RPL4-207 retained intron diencephalon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 764.00 13.45 2.18 85.84 ENST00000565336 lncRNA diencephalon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 3611.00 63.56 10.30 91.51 ENST00000565336 lncRNA diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 331.00 0.14 0.94 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 964.00 0.41 2.75 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1659.00 0.71 4.73 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 180520.00 76.82 515.01 79.58 RBMX-210 retained intron diencephalon (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 3634.00 63.87 10.37 100.0 RPL4-214 retained intron diencephalon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 183.00 3.22 0.52 100.0 RPL4-214 retained intron diencephalon (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 219.00 0.91 0.62 100.0 POLG-DT-202 lncRNA diencephalon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 8019.88 33.20 22.88 56.66 POLG-DT-202 lncRNA diencephalon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 6976.93 28.88 19.90 48.38 POLG-DT-202 lncRNA diencephalon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 4910.00 68.34 14.01 100.0 ENST00000570843 lncRNA diencephalon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 3344.00 74.83 9.54 100.0 MIR497HG-207 lncRNA diencephalon (Tissue)