ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 3.00 0.09 0.01 75.0 RPL5-205 retained intron diencephalon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 351.00 26.23 1.00 100.0 ZBED9-AS1-201 lncRNA diencephalon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 12047.00 92.84 34.37 100.0 RPS3A-206 retained intron diencephalon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 15215.00 95.52 43.41 100.0 COX7C-203 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 613.00 0.38 1.75 100.0 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 29604.21 18.47 84.46 27.43 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 119734.42 74.69 341.59 79.66 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3126.00 1.95 8.92 84.81 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 80395.00 86.28 229.36 98.09 RACK1-230 retained intron diencephalon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 11490.00 12.33 32.78 71.49 RACK1-230 retained intron diencephalon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 60.00 23.26 0.17 100.0 RNA5SP486-201 rRNA pseudogene diencephalon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 496.00 74.92 1.42 100.0 SCARNA5-201 scaRNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1139.00 0.18 3.25 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 19888.00 3.06 56.74 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 17562.00 2.70 50.10 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 468137.00 71.97 1335.55 97.65 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1959.00 0.30 5.59 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 28495.00 4.38 81.29 89.89 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 47.00 0.01 0.13 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1636.00 0.25 4.67 56.81 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 56495.00 8.69 161.17 92.79 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 8373.00 1.29 23.89 42.67 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 575.00 0.09 1.64 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 499.00 0.08 1.42 38.92 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1351.00 82.43 3.85 89.47 MIR3142HG-201 lncRNA diencephalon (Tissue)