ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 61.00 0.04 0.17 36.31 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 9.00 0.01 0.03 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 6368.00 4.57 18.17 83.23 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 115.00 0.08 0.33 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 208.00 0.15 0.59 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1741.00 1.25 4.97 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 115878.00 83.18 330.59 97.62 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 291.00 4.84 0.83 100.0 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3624.00 60.29 10.34 87.71 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 203.00 3.38 0.58 100.0 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 646.00 9.10 1.84 77.74 RN7SL2-201 misc RNA diencephalon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 225.00 3.17 0.64 100.0 RN7SL2-201 misc RNA diencephalon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 3118.00 5.49 8.90 91.38 NOP56-217 protein coding CDS not defined diencephalon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 41044.00 72.26 117.09 79.69 NOP56-217 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 162.00 0.32 0.46 47.65 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 28023.00 55.05 79.95 89.32 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 15419.00 30.29 43.99 97.64 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 178.00 0.35 0.51 52.35 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 810.00 1.59 2.31 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 16.00 0.03 0.05 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 361.00 0.71 1.03 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1401.00 12.61 4.00 100.0 GNL3-211 retained intron diencephalon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 8439.00 75.94 24.08 100.0 GNL3-211 retained intron diencephalon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 2297.00 70.29 6.55 100.0 RPL5-205 retained intron diencephalon (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 3.00 0.09 0.01 75.0 RPL5-205 retained intron diencephalon (Tissue)