ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 11140.00 0.61 20.43 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 34436.00 1.88 63.14 97.24 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 253.00 0.01 0.46 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 1430.00 0.08 2.62 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1661.00 0.09 3.05 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 3560.00 0.19 6.53 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 316.00 0.02 0.58 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 703.00 0.04 1.29 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 16924.00 0.92 31.03 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 168.00 0.01 0.31 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 3240.00 0.18 5.94 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 58676.00 3.21 107.59 68.46 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1908.00 0.10 3.50 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 178485.00 9.75 327.28 97.37 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 2773.00 0.15 5.08 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 1056.00 0.06 1.94 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 93392.00 5.10 171.25 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 5440.00 0.30 9.98 79.89 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 592.37 0.03 1.09 53.95 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 208.00 0.01 0.38 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 5237.00 0.29 9.60 66.67 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1674.00 0.09 3.07 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 4708.00 0.26 8.63 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 651.00 0.04 1.19 100.0 SNHG1-248 lncRNA spinal cord (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 147215.00 38.14 269.94 100.0 SNHG14-315 lncRNA spinal cord (Tissue)