ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 91626.00 23.74 168.01 88.39 SNHG14-315 lncRNA spinal cord (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 82518.00 21.38 151.31 82.41 SNHG14-315 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1894.00 0.71 3.47 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 70208.74 26.32 128.74 34.43 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 293.00 0.11 0.54 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 472.00 0.18 0.87 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 151177.67 56.67 277.21 68.26 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 15418.00 5.78 28.27 87.98 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 202.00 0.08 0.37 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3105.00 1.16 5.69 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 89.00 0.03 0.16 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 5.00 0.00 0.01 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2081.00 0.78 3.82 99.43 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3426.00 3.27 6.28 78.18 SNHG14-323 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 3493.00 0.42 6.40 63.35 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 784676.00 94.51 1438.83 99.58 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 2892.00 0.35 5.30 51.29 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 14652.00 1.76 26.87 96.44 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2341.00 0.28 4.29 100.0 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 24538.00 31.71 44.99 56.1 SNHG14-336 lncRNA spinal cord (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 47780.00 61.75 87.61 88.86 SNHG14-336 lncRNA spinal cord (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 15156.00 55.14 27.79 92.65 SNHG14-341 lncRNA spinal cord (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 321.00 12.09 0.59 100.0 NCL-211 retained intron spinal cord (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1.00 0.70 0.00 100.0 FMN2-209 protein coding CDS not defined spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 129.00 0.88 0.24 100.0 LINC02739-203 lncRNA spinal cord (Tissue)