ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 44957.00 3.10 82.44 96.94 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 121154.00 8.36 222.16 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 577.00 0.04 1.06 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 7298.00 0.50 13.38 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 9589.00 0.66 17.58 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1.00 0.00 0.00 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 150.00 0.01 0.28 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 2267.00 13.91 4.16 100.0 FTX-219 lncRNA spinal cord (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 7164.00 43.97 13.14 81.61 FTX-219 lncRNA spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 849.00 7.28 1.56 45.55 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 47.00 0.40 0.09 41.23 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 2185.00 18.73 4.01 62.32 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 1015.00 8.70 1.86 54.45 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 2262.00 19.39 4.15 84.18 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 95.00 0.81 0.17 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1139.00 9.77 2.09 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 405.00 3.47 0.74 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 10752.00 3.46 19.72 75.08 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2116.00 0.68 3.88 98.37 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 4646.00 1.49 8.52 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 17248.00 5.55 31.63 54.35 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 4642.00 1.49 8.51 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 5930.00 1.91 10.87 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 3454.00 1.11 6.33 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 5700.00 1.83 10.45 100.0 ENST00000651540 lncRNA spinal cord (Tissue)