ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 66610.00 21.29 122.14 85.35 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 21468.00 6.86 39.37 52.28 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2793.93 17.62 5.12 64.99 5S_rRNA.20-201 rRNA pseudogene spinal cord (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 654.00 5.62 1.20 100.0 HSPA9-211 retained intron spinal cord (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1462.00 12.57 2.68 29.28 HSPA9-211 retained intron spinal cord (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 123604.00 91.64 226.65 100.0 DNM3OS-205 lncRNA spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 90.00 0.01 0.17 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3228.00 0.22 5.92 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1955.00 0.13 3.58 64.76 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 11107.00 0.77 20.37 94.85 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 39.00 0.00 0.07 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 583.00 0.04 1.07 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 676.00 0.05 1.24 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1125815.00 77.71 2064.37 99.8 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 2306.00 0.16 4.23 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 9039.00 0.62 16.57 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1626.00 0.11 2.98 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1137.00 0.08 2.08 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2497.00 0.17 4.58 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 590.00 0.04 1.08 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 566.00 0.04 1.04 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 741.00 0.05 1.36 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 12994.00 0.90 23.83 84.51 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 8396.00 0.58 15.40 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 31122.00 2.15 57.07 100.0 GAS5-230 retained intron spinal cord (Tissue)