ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 33437.73 24.50 61.31 33.89 POLG-DT-202 lncRNA spinal cord (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 984.00 0.72 1.80 100.0 POLG-DT-202 lncRNA spinal cord (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 18726.00 69.83 34.34 100.0 ENST00000570843 lncRNA spinal cord (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 7376.00 79.94 13.53 100.0 MIR497HG-207 lncRNA spinal cord (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 616159.00 99.54 1129.83 99.76 MIR22HG-212 lncRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 216.00 0.17 0.40 35.7 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 117474.00 93.43 215.41 96.0 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 389.00 0.31 0.71 64.3 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 2672.00 94.18 4.90 100.0 ENST00000578036 lncRNA spinal cord (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 5305.00 84.89 9.73 100.0 RPL23A-207 protein coding spinal cord (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2611.00 86.11 4.79 100.0 MIR744-201 miRNA spinal cord (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 289.00 65.53 0.53 100.0 MIR378C-201 miRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 16337.00 75.38 29.96 82.72 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 78.00 0.36 0.14 100.0 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 521.00 2.40 0.96 9.15 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 649.00 1.82 1.19 100.0 SNORD3C-201 snoRNA spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 103.92 0.04 0.19 71.67 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 34.47 0.01 0.06 37.46 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 192667.00 78.11 353.29 89.89 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 49664.00 20.14 91.07 90.6 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 88.00 2.22 0.16 100.0 MIR133A1HG-202 lncRNA spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 9327.00 5.71 17.10 44.72 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 19680.00 12.04 36.09 57.84 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 186.00 0.11 0.34 100.0 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 69233.00 42.37 126.95 94.16 RPL17-211 retained intron spinal cord (Tissue)