ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 57455.00 35.16 105.35 96.5 RPL17-211 retained intron spinal cord (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 96984.00 57.44 177.84 75.04 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 19092.00 11.31 35.01 100.0 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 12297.00 7.28 22.55 100.0 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1835.00 3.04 3.36 100.0 RPL17-214 retained intron spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 24181.55 40.00 44.34 48.48 RPL17-214 retained intron spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 32256.02 53.35 59.15 58.93 RPL17-214 retained intron spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 387.00 0.16 0.71 100.0 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 235787.00 98.15 432.35 99.97 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 335.00 0.14 0.61 100.0 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 1296.00 42.83 2.38 100.0 MIR151B-201 miRNA spinal cord (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 1522.00 4.03 2.79 100.0 SNORD3A-201 snoRNA spinal cord (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 17746.00 85.71 32.54 100.0 SNORD92-201 snoRNA spinal cord (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 13865.00 70.77 25.42 100.0 NSRP1-214 protein coding spinal cord (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3407.00 17.39 6.25 76.1 NSRP1-214 protein coding spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 58.00 0.16 0.11 100.0 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 9801.00 26.57 17.97 94.14 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 9996.00 27.10 18.33 87.04 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 6006.00 16.28 11.01 76.51 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 5982.00 16.22 10.97 74.11 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 8.00 38.10 0.01 100.0 MIR122HG-201 lncRNA spinal cord (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 60.00 37.04 0.11 100.0 ODAD3-204 nonsense mediated decay spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 399.00 0.50 0.73 100.0 VMP1-217 retained intron spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 6.00 0.01 0.01 100.0 VMP1-217 retained intron spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 42828.00 53.41 78.53 58.68 VMP1-217 retained intron spinal cord (Tissue)