ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1189.00 8.04 2.18 100.0 ENST00000554988 lncRNA spinal cord (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 3017.00 20.40 5.53 100.0 ENST00000554988 lncRNA spinal cord (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 271.00 1.83 0.50 100.0 ENST00000554988 lncRNA spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1174.00 0.59 2.15 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1620.00 0.81 2.97 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 76926.00 38.35 141.06 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 111069.00 55.37 203.66 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 4709.00 99.39 8.63 100.0 TEKT4P2-201 transcribed unprocessed pseudogene spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 38.00 0.02 0.07 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1333.00 0.73 2.44 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 923.00 0.51 1.69 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 164092.00 90.17 300.89 98.36 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 345.00 0.19 0.63 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 3.00 0.00 0.01 100.0 ENST00000563103 lncRNA spinal cord (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7170.00 48.84 13.15 100.0 RPL4-207 retained intron spinal cord (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 416.00 2.83 0.76 100.0 RPL4-207 retained intron spinal cord (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 3848.00 5.79 7.06 71.33 ENST00000565336 lncRNA spinal cord (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 51528.00 77.58 94.49 93.7 ENST00000565336 lncRNA spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 341811.00 80.93 626.77 84.82 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2314.00 0.55 4.24 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 601.00 0.14 1.10 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2246.00 0.53 4.12 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 6418.00 55.97 11.77 100.0 RPL4-214 retained intron spinal cord (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 371.00 3.24 0.68 100.0 RPL4-214 retained intron spinal cord (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 61831.47 45.30 113.38 59.87 POLG-DT-202 lncRNA spinal cord (Tissue)