ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 25834.00 3.49 47.37 93.17 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 417.00 0.06 0.76 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 7375.00 1.00 13.52 49.02 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 3873.00 80.49 7.10 86.51 MIR3142HG-201 lncRNA spinal cord (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 4829.00 77.61 8.85 100.0 SNHG6-204 retained intron spinal cord (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 80507.00 47.83 147.62 100.0 MIR151A-201 miRNA spinal cord (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 72194.00 42.89 132.38 86.94 MIR151A-201 miRNA spinal cord (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 6048.00 96.86 11.09 100.0 DENND3-221 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 81.00 0.03 0.15 61.83 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3566.00 1.46 6.54 67.94 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 21.00 0.01 0.04 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 50.00 0.02 0.09 38.17 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 339.00 0.14 0.62 66.34 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 1603.00 0.65 2.94 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 2747.00 1.12 5.04 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 245.00 0.10 0.45 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 13057.00 77.17 23.94 100.0 HSPA8-211 retained intron spinal cord (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1065.00 17.21 1.95 100.0 SCARNA9-201 lncRNA spinal cord (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 37791.00 87.57 69.30 100.0 TAF1D-215 retained intron spinal cord (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 260.00 0.60 0.48 100.0 TAF1D-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 2857.00 14.65 5.24 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 11887.00 60.95 21.80 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 48.00 0.25 0.09 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 726.00 19.55 1.33 100.0 RPS2-215 retained intron spinal cord (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 2841523.00 87.83 5210.40 88.8 ENST00000548801 lncRNA spinal cord (Tissue)