ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 17872.00 71.75 32.77 100.0 GNL3-211 retained intron spinal cord (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3206.00 12.87 5.88 100.0 GNL3-211 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 4.00 0.02 0.01 80.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 587.00 3.62 1.08 100.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 12488.00 76.95 22.90 100.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 93.00 4.27 0.17 100.0 ZBED9-AS1-201 lncRNA spinal cord (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 29641.00 89.20 54.35 100.0 RPS3A-206 retained intron spinal cord (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 19777.00 92.74 36.26 100.0 COX7C-203 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 955.00 0.34 1.75 100.0 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 5067.00 1.78 9.29 83.19 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 48824.29 17.15 89.53 25.31 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 216702.18 76.12 397.36 82.85 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 109724.00 78.49 201.20 96.13 RACK1-230 retained intron spinal cord (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 26565.00 19.00 48.71 66.43 RACK1-230 retained intron spinal cord (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 42.00 10.69 0.08 100.0 RNA5SP486-201 rRNA pseudogene spinal cord (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1185.00 74.25 2.17 100.0 SCARNA5-201 scaRNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 433436.00 58.54 794.78 92.65 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 25834.00 3.49 47.37 93.17 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 417.00 0.06 0.76 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 7375.00 1.00 13.52 49.02 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 31611.00 4.27 57.96 81.8 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 4096.00 0.55 7.51 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 40750.00 5.50 74.72 54.23 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 2905.00 0.39 5.33 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1239.00 0.17 2.27 52.52 RNY4-201 misc RNA spinal cord (Tissue)