ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2727.00 62.52 5.00 100.0 SNORD111B-201 snoRNA spinal cord (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 6134.00 41.41 11.25 100.0 RNU2-36P-201 snRNA spinal cord (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 103.00 0.70 0.19 100.0 RNU2-36P-201 snRNA spinal cord (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 586.00 0.79 1.07 100.0 SNORD19C-201 snoRNA spinal cord (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 70053.00 94.88 128.45 99.05 SNORD19C-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 223815.00 93.62 410.40 98.69 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2704.00 1.13 4.96 100.0 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 91.00 0.04 0.17 100.0 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 6679.00 29.27 12.25 100.0 Y_RNA.609-201 misc RNA spinal cord (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 1141.00 34.68 2.09 100.0 Y_RNA.612-201 misc RNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 815.00 0.65 1.49 100.0 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 117085.00 93.30 214.69 98.77 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 2384.00 1.90 4.37 100.0 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2181.00 8.52 4.00 51.55 MIR194-2HG-201 lncRNA spinal cord (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 21478.00 83.95 39.38 95.44 MIR194-2HG-201 lncRNA spinal cord (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 6.00 0.03 0.01 100.0 LINC01783-201 lncRNA spinal cord (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 21.00 65.62 0.04 100.0 RPS7P15-201 processed pseudogene spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 138.00 1.19 0.25 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 2335.00 20.18 4.28 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1590.00 13.74 2.92 83.33 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1256.00 10.86 2.30 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 565.00 4.88 1.04 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 63.00 88.73 0.12 100.0 MRPL32-203 nonsense mediated decay spinal cord (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 2925.00 97.24 5.36 100.0 ENST00000436739 lncRNA spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1370.00 3.68 2.51 71.13 TMEM107-204 protein coding spinal cord (Tissue)