ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 3362.00 77.27 6.16 100.0 SNORD70B-201 snoRNA spinal cord (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 16621.00 56.30 30.48 95.33 RNY4P18-201 misc RNA spinal cord (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 99908.00 93.53 183.20 100.0 SNORD90-201 snoRNA spinal cord (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1182.00 1.11 2.17 17.96 SNORD90-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 2224.00 1.39 4.08 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 145699.00 91.02 267.16 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2758.00 1.72 5.06 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1843.00 1.15 3.38 100.0 SNORD69-201 snoRNA spinal cord (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2939.00 56.51 5.39 75.49 SNORD70-201 snoRNA spinal cord (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 457.00 2.69 0.84 100.0 B4GALNT2-202 protein coding spinal cord (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 11437.00 67.24 20.97 82.45 B4GALNT2-202 protein coding spinal cord (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 3443.00 93.03 6.31 100.0 NDE1-202 protein coding spinal cord (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 39.00 88.64 0.07 100.0 MIR208B-201 miRNA spinal cord (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 2840.00 62.83 5.21 100.0 MIR450B-201 miRNA spinal cord (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 1126.00 57.95 2.06 100.0 MIR887-201 miRNA spinal cord (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 14773.00 91.19 27.09 100.0 MIR889-201 miRNA spinal cord (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 3854.00 78.89 7.07 100.0 SNORD111-201 snoRNA spinal cord (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4483.00 63.75 8.22 79.95 SNORD88A-201 snoRNA spinal cord (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 706.00 95.92 1.29 100.0 MIR548K-201 miRNA spinal cord (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 1066.00 66.96 1.95 100.0 MIR320B2-201 miRNA spinal cord (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 70.00 88.61 0.13 100.0 MIR1271-201 miRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 60.00 0.06 0.11 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 94172.00 92.91 172.68 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1945.00 1.92 3.57 100.0 SNORD100-201 snoRNA spinal cord (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 290.00 0.29 0.53 100.0 SNORD100-201 snoRNA spinal cord (Tissue)