ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1370.00 3.68 2.51 71.13 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1859.00 4.99 3.41 100.0 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 4292.00 11.52 7.87 61.28 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 2882.00 7.73 5.28 100.0 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3162.00 59.68 5.80 89.12 SNHG16-201 lncRNA spinal cord (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1163.00 21.95 2.13 100.0 SNHG16-201 lncRNA spinal cord (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 10026.00 16.81 18.38 100.0 SNHG14-207 lncRNA spinal cord (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 121208.00 87.70 222.25 97.34 SNORD105B-201 snoRNA spinal cord (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 8234.00 55.58 15.10 77.37 SNORD121B-201 snoRNA spinal cord (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1773.00 1.29 3.25 100.0 SNORD127-201 snoRNA spinal cord (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 127912.00 93.07 234.55 99.28 SNORD127-201 snoRNA spinal cord (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 43142.00 94.80 79.11 100.0 SNORD42B-201 snoRNA spinal cord (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 264.00 0.66 0.48 100.0 RNY4P25-201 misc RNA spinal cord (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1650.00 64.50 3.03 100.0 SNORD121A-201 snoRNA spinal cord (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 8254.00 73.71 15.14 88.41 SNORD126-201 snoRNA spinal cord (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2284.00 20.40 4.19 67.3 SNORD126-201 snoRNA spinal cord (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 48432.00 91.76 88.81 95.94 SNORD124-201 snoRNA spinal cord (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 60.00 1.91 0.11 100.0 SNHG12-201 retained intron spinal cord (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 10568.00 30.14 19.38 100.0 RPL3-212 retained intron spinal cord (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 12501.00 35.65 22.92 95.87 RPL3-212 retained intron spinal cord (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 80434.00 97.11 147.49 100.0 SMC1A-204 retained intron spinal cord (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 38865.00 84.62 71.27 98.2 RABGGTB-208 protein coding CDS not defined spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 10919.00 46.20 20.02 76.04 DDX39B-219 retained intron spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 737.00 3.12 1.35 100.0 DDX39B-219 retained intron spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1714.00 7.25 3.14 100.0 DDX39B-219 retained intron spinal cord (Tissue)