ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1.86 0.01 0.01 93.24 SNHG19-202 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 6751.00 25.35 21.88 100.0 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 11772.00 44.21 38.15 77.27 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 643.00 2.41 2.08 100.0 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 3.00 75.00 0.01 100.0 MIR302CHG-205 lncRNA occipital lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1331.00 1.48 4.31 74.78 MIR99AHG-370 lncRNA occipital lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 86322.00 95.80 279.75 98.61 MIR99AHG-370 lncRNA occipital lobe (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 177.00 96.20 0.57 100.0 HPS4-237 retained intron occipital lobe (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 609.00 90.76 1.97 100.0 MEG8-253 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 40.00 19.90 0.13 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 42.00 20.90 0.14 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 20.00 9.95 0.06 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 662.00 13.29 2.15 100.0 DNAJC5-203 nonsense mediated decay occipital lobe (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 118.00 13.96 0.38 100.0 ENST00000707189 TEC occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 887.00 0.32 2.87 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 117996.32 42.40 382.40 47.67 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 42.00 0.02 0.14 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 583.00 0.21 1.89 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 144141.95 51.79 467.13 55.81 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 5430.00 1.95 17.60 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 307.00 0.11 0.99 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 3928.00 1.41 12.73 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2723.00 0.98 8.82 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 1198.00 0.32 3.88 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 642.00 0.17 2.08 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)