ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 4473.00 90.04 14.50 96.03 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 6.00 0.85 0.02 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 323.00 20.04 1.05 82.82 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 10.00 0.02 0.03 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 358.00 1.29 1.16 75.05 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 37.00 34.91 0.12 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 679.00 42.23 2.20 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 57210.00 95.66 185.40 99.81 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 5.00 0.15 0.02 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 343.00 10.16 1.11 57.45 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 51.00 30.72 0.17 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 9.00 6.08 0.03 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 22.00 4.20 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 4722.00 91.35 15.30 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 422.00 85.77 1.37 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 14067.00 77.63 45.59 98.64 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 142.00 0.78 0.46 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 377.00 0.67 1.22 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 419.00 60.55 1.36 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 99.00 4.46 0.32 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 400.00 12.63 1.30 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 86.00 2.71 0.28 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 10.00 0.32 0.03 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 2.00 18.18 0.01 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA occipital lobe (Tissue)