ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 28.00 0.01 0.09 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2.00 0.00 0.01 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4020.00 1.34 13.03 99.06 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 2550.00 5.74 8.26 62.04 SNHG14-323 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 78483.00 94.42 254.34 98.01 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 142.00 0.17 0.46 61.47 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 136.00 0.16 0.44 53.97 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1402.00 1.69 4.54 87.68 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 56.00 0.07 0.18 100.0 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 23720.00 64.91 76.87 88.61 SNHG14-336 lncRNA occipital lobe (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 11240.00 30.76 36.43 49.04 SNHG14-336 lncRNA occipital lobe (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 25989.00 81.94 84.22 95.64 SNHG14-341 lncRNA occipital lobe (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 183.00 11.08 0.59 100.0 NCL-211 retained intron occipital lobe (Tissue)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1.00 0.96 0.00 100.0 NCL-216 retained intron occipital lobe (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 419.00 5.30 1.36 100.0 FMN2-209 protein coding CDS not defined occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.03 0.00 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 115.00 3.47 0.37 63.54 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 453.00 13.68 1.47 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 194.00 5.86 0.63 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 163.00 4.92 0.53 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 66.00 1.99 0.21 36.46 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 29476.00 85.93 95.52 100.0 MIR124-1HG-216 lncRNA occipital lobe (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 131.00 16.31 0.42 100.0 SNHG10-212 lncRNA occipital lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 10658.85 34.57 34.54 35.83 SNHG19-202 lncRNA occipital lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 19042.26 61.76 61.71 74.96 SNHG19-202 lncRNA occipital lobe (Tissue)