ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 110205.00 9.21 374.39 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 263.00 0.02 0.89 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4516.00 0.38 15.34 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 9516.00 0.79 32.33 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1.00 0.00 0.00 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 172.00 0.01 0.58 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 847.00 13.38 2.88 100.0 FTX-219 lncRNA spinal cord (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 3161.00 49.95 10.74 83.67 FTX-219 lncRNA spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 191.00 5.04 0.65 61.41 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 14.00 0.37 0.05 16.87 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 700.00 18.48 2.38 60.34 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 120.00 3.17 0.41 38.59 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 856.00 22.60 2.91 88.98 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 37.00 0.98 0.13 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 427.00 11.27 1.45 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 239.00 6.31 0.81 100.0 CTC1-214 protein coding spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 7622.00 4.22 25.89 72.75 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1028.00 0.57 3.49 98.37 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 2835.00 1.57 9.63 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 12018.00 6.65 40.83 53.76 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 2675.00 1.48 9.09 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 3178.00 1.76 10.80 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1170.00 0.65 3.97 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 2727.00 1.51 9.26 100.0 ENST00000651540 lncRNA spinal cord (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 2482.00 1.37 8.43 100.0 ENST00000651540 lncRNA spinal cord (Tissue)