ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 2.00 1.92 0.01 100.0 HCN2-201 protein coding spinal cord (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 820.00 86.86 2.79 100.0 SLC49A4-201 protein coding spinal cord (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 1484.00 19.21 5.04 100.0 ATP5MC3-201 protein coding spinal cord (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 314.00 94.58 1.07 100.0 CDC25A-201 protein coding spinal cord (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 415.00 84.87 1.41 100.0 BLOC1S4-201 protein coding spinal cord (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 198.00 4.83 0.67 100.0 ATAD5-201 protein coding spinal cord (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 727.00 30.37 2.47 100.0 SLITRK5-201 protein coding spinal cord (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 18.00 36.00 0.06 100.0 HASPIN-201 protein coding spinal cord (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1074.00 62.51 3.65 100.0 PRR14L-201 protein coding spinal cord (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 10871.00 98.18 36.93 100.0 ATG101-201 protein coding spinal cord (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 3985.00 86.42 13.54 100.0 PRICKLE1-201 protein coding spinal cord (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1351.00 96.98 4.59 98.69 MIR133A2-201 miRNA spinal cord (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 23.00 18.40 0.08 100.0 PBLD-204 protein coding spinal cord (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 742829.00 89.52 2523.56 99.07 MIRLET7BHG-201 lncRNA spinal cord (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 55493.00 6.69 188.52 91.6 MIRLET7BHG-201 lncRNA spinal cord (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 15.00 1.27 0.05 35.71 MIR375-201 miRNA spinal cord (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1152.00 97.54 3.91 98.55 MIR375-201 miRNA spinal cord (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 5305.00 75.67 18.02 100.0 MIR30E-201 miRNA spinal cord (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 944.00 13.46 3.21 100.0 MIR30E-201 miRNA spinal cord (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 448.00 49.45 1.52 100.0 MIR29A-201 miRNA spinal cord (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 632.00 81.55 2.15 100.0 MIR345-201 miRNA spinal cord (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 91366.00 98.29 310.39 100.0 MIR16-2-201 miRNA spinal cord (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 1003.00 4.95 3.41 100.0 MIR340-201 miRNA spinal cord (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 18274.00 90.13 62.08 100.0 MIR340-201 miRNA spinal cord (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 10567.00 82.01 35.90 100.0 MIR107-201 miRNA spinal cord (Tissue)