ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 18016.00 7.89 61.20 52.68 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3517.81 22.57 11.95 68.29 5S_rRNA.20-201 rRNA pseudogene spinal cord (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 452.00 7.48 1.54 100.0 HSPA9-211 retained intron spinal cord (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 774.00 12.81 2.63 30.15 HSPA9-211 retained intron spinal cord (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 81377.00 92.42 276.46 100.0 DNM3OS-205 lncRNA spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 69.00 0.01 0.23 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1744.00 0.15 5.92 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1047.00 0.09 3.56 61.62 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 8075.00 0.67 27.43 94.6 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 12.00 0.00 0.04 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 144.00 0.01 0.49 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 615.00 0.05 2.09 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 921273.00 76.96 3129.77 99.8 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1225.00 0.10 4.16 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2343.00 0.20 7.96 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 756.00 0.06 2.57 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1001.00 0.08 3.40 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2030.00 0.17 6.90 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 515.00 0.04 1.75 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 209.00 0.02 0.71 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 371.00 0.03 1.26 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7659.00 0.64 26.02 83.32 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3494.00 0.29 11.87 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 37575.00 3.14 127.65 100.0 GAS5-230 retained intron spinal cord (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 46334.00 3.87 157.41 96.87 GAS5-230 retained intron spinal cord (Tissue)