ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 628340.48 78.72 2134.61 85.31 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 166959.79 20.92 567.20 21.24 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1514.00 0.19 5.14 87.16 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 84.00 0.01 0.29 100.0 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 13.00 0.00 0.04 100.0 C19orf48P-203 retained intron spinal cord (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 3.00 100.00 0.01 100.0 ENST00000597420 lncRNA spinal cord (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 62.00 2.60 0.21 100.0 RPS11-206 retained intron spinal cord (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2044.00 85.67 6.94 100.0 RPS11-206 retained intron spinal cord (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 59333.00 61.47 201.57 63.63 CARMN-209 lncRNA spinal cord (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1923.00 34.61 6.53 100.0 ENST00000602478 lncRNA spinal cord (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1797.00 31.52 6.10 100.0 SNORD114-21-201 snoRNA spinal cord (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2249.00 39.44 7.64 100.0 SNORD114-21-201 snoRNA spinal cord (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 16113.00 30.72 54.74 100.0 SNORD115-40-201 snoRNA spinal cord (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 49865.00 98.72 169.40 100.0 MIR98-201 miRNA spinal cord (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 44296.00 96.81 150.48 100.0 SNORD113-5-201 snoRNA spinal cord (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2541.00 93.90 8.63 100.0 MIR15A-201 miRNA spinal cord (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 579.00 84.65 1.97 100.0 MIR376C-201 miRNA spinal cord (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1125.00 53.55 3.82 100.0 SNHG21-206 retained intron spinal cord (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 47.00 9.13 0.16 100.0 SNORD11B-201 snoRNA spinal cord (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2457.00 75.55 8.35 100.0 SNORD91B-201 snoRNA spinal cord (Tissue)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 7625.00 66.88 25.90 100.0 MIR219A2HG-201 lncRNA spinal cord (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 7577.00 56.92 25.74 67.91 SNORD91A-201 snoRNA spinal cord (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 27019.00 46.94 91.79 96.84 MIR486-1-201 miRNA spinal cord (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 21154.00 18.05 71.86 76.89 NOP56-219 retained intron spinal cord (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1579.00 1.35 5.36 100.0 NOP56-219 retained intron spinal cord (Tissue)