ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 10400.00 54.73 35.33 75.63 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 3101.00 16.32 10.53 100.0 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1371.00 7.21 4.66 100.0 ENST00000582320 lncRNA spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1420.00 2.76 4.82 100.0 RPL17-214 retained intron spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 22682.39 44.12 77.06 52.0 RPL17-214 retained intron spinal cord (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 26676.32 51.89 90.63 56.57 RPL17-214 retained intron spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 262.00 0.27 0.89 100.0 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 93917.00 97.71 319.06 99.97 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 210.00 0.22 0.71 100.0 SNORD43-201 snoRNA spinal cord (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 493.00 36.63 1.67 100.0 MIR151B-201 miRNA spinal cord (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 310.00 1.75 1.05 100.0 SNORD3A-201 snoRNA spinal cord (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 10058.00 89.33 34.17 100.0 SNORD92-201 snoRNA spinal cord (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 8657.00 64.36 29.41 100.0 NSRP1-214 protein coding spinal cord (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3329.00 24.75 11.31 82.77 NSRP1-214 protein coding spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 30.00 0.21 0.10 100.0 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 4569.00 31.23 15.52 94.4 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 3856.00 26.36 13.10 89.2 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2200.00 15.04 7.47 77.41 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 2143.00 14.65 7.28 72.47 MIR23AHG-201 lncRNA spinal cord (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 11.00 64.71 0.04 100.0 MIR122HG-201 lncRNA spinal cord (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 32.00 41.03 0.11 100.0 ODAD3-204 nonsense mediated decay spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 137.00 0.31 0.47 100.0 VMP1-217 retained intron spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 2.00 0.00 0.01 100.0 VMP1-217 retained intron spinal cord (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 23899.00 54.23 81.19 58.93 VMP1-217 retained intron spinal cord (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 482.00 0.06 1.64 100.0 C19orf48P-203 retained intron spinal cord (Tissue)