ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 122124.00 95.47 414.88 99.46 RPL13-207 retained intron spinal cord (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1493.00 1.17 5.07 100.0 RPL13-207 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2057.00 0.36 6.99 75.57 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 133.00 0.02 0.45 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3214.00 0.56 10.92 54.63 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1464.00 0.26 4.97 59.01 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 70.00 0.01 0.24 58.82 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 804.00 0.14 2.73 38.43 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5642.00 0.99 19.17 82.7 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 41254.00 7.25 140.15 56.72 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 347.00 0.06 1.18 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 485129.00 85.20 1648.09 98.95 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2595.00 0.46 8.82 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 736.00 0.13 2.50 49.16 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 11.00 0.00 0.04 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 8426.00 1.48 28.62 74.72 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 187.00 0.03 0.64 100.0 EIF4A2-219 retained intron spinal cord (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 42788.00 95.93 145.36 100.0 RPS8-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 254.00 17.80 0.86 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 161.00 11.28 0.55 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 309.00 21.65 1.05 100.0 RPL7A-206 protein coding CDS not defined spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2219.00 0.34 7.54 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1610.00 0.25 5.47 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 488.00 0.07 1.66 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 37195.00 5.68 126.36 98.7 RPL21-209 retained intron spinal cord (Tissue)