ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 488.00 0.07 1.66 100.0 RPL21-209 retained intron spinal cord (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 409.00 39.56 1.39 100.0 GABRE-209 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 4.00 0.00 0.01 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 302.00 0.11 1.03 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12555.00 4.44 42.65 83.29 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1108.00 0.39 3.76 65.83 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 373.00 0.13 1.27 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 228476.00 80.87 776.18 97.84 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 5.00 0.00 0.02 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 5302.00 1.88 18.01 100.0 RPL13A-212 retained intron spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 586.00 8.57 1.99 100.0 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 114.00 1.67 0.39 100.0 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3682.00 53.87 12.51 86.23 RPL7A-207 protein coding CDS not defined spinal cord (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 2750.00 5.18 9.34 100.0 RN7SL2-201 misc RNA spinal cord (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1508.00 2.84 5.12 58.16 RN7SL2-201 misc RNA spinal cord (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 22695.00 65.19 77.10 80.25 NOP56-217 protein coding CDS not defined spinal cord (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 3859.00 11.08 13.11 90.95 NOP56-217 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 388.00 0.46 1.32 44.7 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 692.00 0.82 2.35 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 429.00 0.51 1.46 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 480.00 0.57 1.63 55.3 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 51838.00 61.21 176.11 89.85 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 19767.00 23.34 67.15 97.92 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 35.00 0.04 0.12 100.0 RABGGTB-213 protein coding CDS not defined spinal cord (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 9739.00 70.65 33.09 100.0 GNL3-211 retained intron spinal cord (Tissue)