ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1494.00 12.96 5.08 60.81 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1003.00 8.70 3.41 100.0 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 58.00 0.50 0.20 100.0 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1704.00 25.32 5.79 100.0 SNHG16-201 lncRNA spinal cord (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 4084.00 60.69 13.87 87.28 SNHG16-201 lncRNA spinal cord (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 7233.00 16.42 24.57 100.0 SNHG14-207 lncRNA spinal cord (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 90839.00 87.90 308.60 96.97 SNORD105B-201 snoRNA spinal cord (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 4027.00 54.23 13.68 74.59 SNORD121B-201 snoRNA spinal cord (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 85.00 0.09 0.29 100.0 SNORD127-201 snoRNA spinal cord (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 90949.00 95.09 308.97 99.32 SNORD127-201 snoRNA spinal cord (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 26332.00 95.19 89.46 100.0 SNORD42B-201 snoRNA spinal cord (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 153.00 1.06 0.52 100.0 RNY4P25-201 misc RNA spinal cord (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 953.00 69.06 3.24 100.0 SNORD121A-201 snoRNA spinal cord (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5591.00 74.40 18.99 89.33 SNORD126-201 snoRNA spinal cord (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1564.00 20.81 5.31 69.42 SNORD126-201 snoRNA spinal cord (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 21502.00 90.89 73.05 95.45 SNORD124-201 snoRNA spinal cord (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 25.00 1.49 0.08 100.0 SNHG12-201 retained intron spinal cord (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 6278.00 29.76 21.33 84.75 RPL3-212 retained intron spinal cord (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6894.00 32.68 23.42 100.0 RPL3-212 retained intron spinal cord (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 34257.00 96.75 116.38 100.0 SMC1A-204 retained intron spinal cord (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 19610.00 85.85 66.62 98.23 RABGGTB-208 protein coding CDS not defined spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7331.00 45.50 24.91 73.65 DDX39B-219 retained intron spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 670.00 4.16 2.28 100.0 DDX39B-219 retained intron spinal cord (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 884.00 5.49 3.00 100.0 DDX39B-219 retained intron spinal cord (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3450.00 71.68 11.72 100.0 RPS8-206 protein coding CDS not defined spinal cord (Tissue)