ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 2733.00 45.63 9.28 100.0 RNU2-36P-201 snRNA spinal cord (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 62.00 1.04 0.21 100.0 RNU2-36P-201 snRNA spinal cord (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 263.00 0.59 0.89 100.0 SNORD19C-201 snoRNA spinal cord (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 42431.00 95.38 144.15 99.05 SNORD19C-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1883.00 1.21 6.40 100.0 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 29.00 0.02 0.10 100.0 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 147186.00 94.43 500.02 98.77 SNORD12B-201 snoRNA spinal cord (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 3845.00 35.14 13.06 100.0 Y_RNA.609-201 misc RNA spinal cord (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 579.00 32.20 1.97 100.0 Y_RNA.612-201 misc RNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 106394.00 95.72 361.44 99.11 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1611.00 1.45 5.47 100.0 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 545.00 0.49 1.85 100.0 SNORD71-201 snoRNA spinal cord (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 8823.00 83.20 29.97 94.65 MIR194-2HG-201 lncRNA spinal cord (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1028.00 9.69 3.49 52.32 MIR194-2HG-201 lncRNA spinal cord (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 4.00 0.10 0.01 100.0 LINC01783-201 lncRNA spinal cord (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 40.00 93.02 0.14 100.0 RPS7P15-201 processed pseudogene spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 370.00 6.00 1.26 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1537.00 24.91 5.22 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 638.00 10.34 2.17 84.95 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 732.00 11.86 2.49 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 77.00 1.25 0.26 100.0 SNORD62B-201 snoRNA spinal cord (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 62.00 93.94 0.21 100.0 MRPL32-203 nonsense mediated decay spinal cord (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 3110.00 98.11 10.57 100.0 ENST00000436739 lncRNA spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 58.00 0.50 0.20 100.0 TMEM107-204 protein coding spinal cord (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 137.00 1.19 0.47 70.62 TMEM107-204 protein coding spinal cord (Tissue)