ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 3037.00 58.30 6.27 76.71 TMC5-202 protein coding GM12878 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 5544.00 96.43 11.45 100.0 ZMYM2-203 protein coding GM12878 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 522.00 3.68 1.08 100.0 RNVU1-7-201 snRNA GM12878 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 19531.00 87.37 40.34 100.0 SNORD24-201 snoRNA GM12878 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 14390.00 94.08 29.72 100.0 Y_RNA.389-201 misc RNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 700.00 0.51 1.45 100.0 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 669.00 0.48 1.38 100.0 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 24899.00 18.05 51.43 89.48 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 102775.00 74.49 212.27 96.87 SNORD101-201 snoRNA GM12878 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 388014.00 98.02 801.40 100.0 SNORD37-201 snoRNA GM12878 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 9101.00 56.01 18.80 92.38 SNORD59A-201 snoRNA GM12878 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 148.00 22.42 0.31 100.0 SNORA7B-201 snoRNA GM12878 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 1275.00 63.40 2.63 100.0 SNORD14D-201 snoRNA GM12878 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 4510.00 32.19 9.31 100.0 Y_RNA.555-201 misc RNA GM12878 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 118503.00 90.45 244.75 93.43 MIR25-201 miRNA GM12878 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 139.00 90.85 0.29 93.92 MIR99B-201 miRNA GM12878 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 1577.00 34.10 3.26 88.45 MIR23B-201 miRNA GM12878 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 2200.00 47.58 4.54 84.91 MIR23B-201 miRNA GM12878 (Cell line)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 4.00 0.73 0.01 100.0 MIR203A-201 miRNA GM12878 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 78.00 62.90 0.16 95.12 MIR199B-201 miRNA GM12878 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 36.00 29.03 0.07 100.0 MIR199B-201 miRNA GM12878 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 2545.00 96.29 5.26 100.0 MIR30B-201 miRNA GM12878 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 4842.00 88.80 10.00 100.0 MIR181D-201 miRNA GM12878 (Cell line)
ENST00000384857.1 ENST00000384857.1_61_83_+ 61–83 2.00 100.00 0.00 100.0 MIR508-201 miRNA GM12878 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 285.00 94.68 0.59 100.0 MIR215-201 miRNA GM12878 (Cell line)