ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 6511.00 1.21 13.45 100.0 MIR181A2-201 miRNA GM12878 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 766008.00 98.80 1582.10 99.77 MIR191-201 miRNA GM12878 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 5.00 27.78 0.01 71.43 MIR149-201 miRNA GM12878 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 2819.00 11.92 5.82 100.0 MIR181C-201 miRNA GM12878 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 18312.00 77.46 37.82 91.78 MIR181C-201 miRNA GM12878 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 575.00 90.84 1.19 100.0 MIR194-1-201 miRNA GM12878 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 5314.00 67.71 10.98 71.12 MIR128-2-201 miRNA GM12878 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 6077.00 85.63 12.55 92.45 MIR99A-201 miRNA GM12878 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 245.00 85.96 0.51 96.46 MIR28-201 miRNA GM12878 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 24.00 8.42 0.05 96.0 MIR28-201 miRNA GM12878 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 2246.00 76.58 4.64 100.0 MIR183-201 miRNA GM12878 (Cell line)
ENST00000384967.1 ENST00000384967.1_56_76_+ 56–76 2.00 100.00 0.00 100.0 MIR145-201 miRNA GM12878 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 82384.00 95.65 170.15 97.79 MIR186-201 miRNA GM12878 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 179.00 90.86 0.37 100.0 MIR200B-201 miRNA GM12878 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 78472.00 90.76 162.08 95.8 MIR181B2-201 miRNA GM12878 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 811.00 88.06 1.68 91.33 MIR10B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 3090.00 8.51 6.38 100.0 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 17918.82 49.37 37.01 59.92 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 13020.60 35.87 26.89 41.23 MIR130B-201 miRNA GM12878 (Cell line)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 5.00 5.15 0.01 100.0 MIR199A1-201 miRNA GM12878 (Cell line)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 1.00 50.00 0.00 100.0 MIR487B-201 miRNA GM12878 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 29964.49 57.45 61.89 59.66 MIR93-201 miRNA GM12878 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 20451.75 39.21 42.24 48.06 MIR93-201 miRNA GM12878 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 5801.00 75.09 11.98 86.47 MIR532-201 miRNA GM12878 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 7622.00 82.54 15.74 100.0 MIR15B-201 miRNA GM12878 (Cell line)