ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1162.00 52.25 2.40 100.0 HCN2-201 protein coding GM12878 (Cell line)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 1.89 0.00 100.0 SLC49A4-201 protein coding GM12878 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 261.00 1.51 0.54 100.0 ATP5MC3-201 protein coding GM12878 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 21267.00 98.13 43.92 100.0 CDC25A-201 protein coding GM12878 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 4.00 0.76 0.01 100.0 RUNX3-201 protein coding GM12878 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 1570.00 75.66 3.24 100.0 BLOC1S4-201 protein coding GM12878 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 4375.00 36.29 9.04 100.0 ATAD5-201 protein coding GM12878 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 1725.00 14.31 3.56 100.0 SLITRK5-201 protein coding GM12878 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 344.00 50.00 0.71 100.0 HASPIN-201 protein coding GM12878 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 2515.00 55.07 5.19 100.0 PRR14L-201 protein coding GM12878 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 3544.00 95.68 7.32 100.0 ATG101-201 protein coding GM12878 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 375.00 81.17 0.77 100.0 PRICKLE1-201 protein coding GM12878 (Cell line)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 8.00 100.00 0.02 100.0 MIR133A2-201 miRNA GM12878 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 3605.00 54.51 7.45 100.0 PBLD-204 protein coding GM12878 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 66467.00 93.24 137.28 99.03 MIRLET7BHG-201 lncRNA GM12878 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 2367.00 3.32 4.89 93.71 MIRLET7BHG-201 lncRNA GM12878 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 27.00 90.00 0.06 96.43 MIR375-201 miRNA GM12878 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 3.33 0.00 50.0 MIR375-201 miRNA GM12878 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 18597.00 5.85 38.41 100.0 MIR30E-201 miRNA GM12878 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 290828.00 91.45 600.67 100.0 MIR30E-201 miRNA GM12878 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 16970.00 64.83 35.05 100.0 MIR29A-201 miRNA GM12878 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 4400.00 88.67 9.09 100.0 MIR345-201 miRNA GM12878 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 543041.00 98.90 1121.59 100.0 MIR16-2-201 miRNA GM12878 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 1.00 6.67 0.00 100.0 MIR340-201 miRNA GM12878 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 13.00 86.67 0.03 100.0 MIR340-201 miRNA GM12878 (Cell line)