ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 114.00 0.89 0.24 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 218.00 1.70 0.45 37.14 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 1851.00 14.45 3.82 83.38 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 455.00 3.55 0.94 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 167.00 1.30 0.34 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 220.00 18.27 0.45 100.0 SNORD14C-201 snoRNA GM12878 (Cell line)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 3.00 30.00 0.01 100.0 SNORD115-44-201 snoRNA GM12878 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 892.00 11.62 1.84 100.0 RNA5SP77-201 rRNA pseudogene GM12878 (Cell line)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 1.00 7.69 0.00 100.0 SNORD114-22-201 snoRNA GM12878 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 124494.00 88.93 257.13 100.0 SNORD6-201 snoRNA GM12878 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1716.00 1.23 3.54 100.0 SNORD6-201 snoRNA GM12878 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1857.00 11.73 3.84 100.0 RNY3-201 misc RNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 1766.00 5.93 3.65 88.12 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 2932.00 9.85 6.06 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1211.00 4.07 2.50 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 7627.00 25.62 15.75 100.0 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 2111.00 7.09 4.36 82.59 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 5731.61 19.25 11.84 62.08 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 3795.41 12.75 7.84 41.11 SNORD82-201 snoRNA GM12878 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 199610.00 94.99 412.27 97.52 MIR146B-201 miRNA GM12878 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 47.00 13.02 0.10 100.0 SNHG20-201 lncRNA GM12878 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 2842.00 17.86 5.87 100.0 ATP5MK-205 protein coding GM12878 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 3158.00 19.85 6.52 100.0 ATP5MK-205 protein coding GM12878 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 2829.00 35.42 5.84 100.0 LINC01556-201 lncRNA GM12878 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 5898.00 57.55 12.18 100.0 ATAD3A-202 protein coding GM12878 (Cell line)