ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 5240.00 1.73 10.82 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 5314.00 1.75 10.98 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 8738.55 2.88 18.05 30.93 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 2961.00 0.98 6.12 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 9254.97 3.05 19.12 18.18 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 1.00 6.25 0.00 100.0 SNORD114-9-201 snoRNA GM12878 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1.00 6.25 0.00 100.0 SNORD114-9-201 snoRNA GM12878 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 6035.00 7.69 12.46 100.0 Y_RNA.234-201 misc RNA GM12878 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 178.00 0.05 0.37 100.0 RNA5S9-201 rRNA GM12878 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 5816.00 3.41 12.01 100.0 RNA5SP141-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 13762.00 81.58 28.42 100.0 ENST00000364722 snoRNA GM12878 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 11783.00 39.23 24.34 100.0 SNORD52-201 snoRNA GM12878 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 1180.00 25.13 2.44 43.33 SNORD117-201 snoRNA GM12878 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 1543.00 32.86 3.19 57.08 SNORD117-201 snoRNA GM12878 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 483.00 1.12 1.00 100.0 RNA5SP298-201 rRNA pseudogene GM12878 (Cell line)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 1.00 20.00 0.00 100.0 SNORD115-38-201 snoRNA GM12878 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 3.00 42.86 0.01 100.0 SNORD115-10-201 snoRNA GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 539.00 1.28 1.11 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 2200.00 5.21 4.54 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 36763.00 87.08 75.93 100.0 SNORD38A-201 snoRNA GM12878 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 2.00 14.29 0.00 100.0 SNORD114-20-201 snoRNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 167.00 1.30 0.34 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 1377.00 10.75 2.84 83.35 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 86.00 0.67 0.18 100.0 7SK.1-201 misc RNA GM12878 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 1851.00 14.45 3.82 83.38 7SK.1-201 misc RNA GM12878 (Cell line)