ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 17.00 0.10 0.04 100.0 RNY4P9-201 misc RNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 249.00 3.64 0.51 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 470.00 6.87 0.97 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 152.00 2.22 0.31 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 147.00 2.15 0.30 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 92.00 1.35 0.19 100.0 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 453.00 6.62 0.94 78.65 RNU5B-1-201 snRNA GM12878 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 16.00 88.89 0.03 100.0 SNORD115-18-201 snoRNA GM12878 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 1.00 0.00 0.00 33.33 RNY4P27-201 misc RNA GM12878 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 182.00 0.76 0.38 98.91 RNY4P27-201 misc RNA GM12878 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 1396.00 16.39 2.88 100.0 Y_RNA.136-201 misc RNA GM12878 (Cell line)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 3.00 42.86 0.01 100.0 SNORD115-41-201 snoRNA GM12878 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 4.00 25.00 0.01 100.0 SNORD114-25-201 snoRNA GM12878 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1.00 100.00 0.00 100.0 SNORD113-7-201 snoRNA GM12878 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 668.00 20.21 1.38 100.0 Y_RNA.181-201 misc RNA GM12878 (Cell line)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 1.00 16.67 0.00 100.0 SNORD115-16-201 snoRNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 16447.68 19.91 33.97 45.19 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 98.00 0.12 0.20 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 204.00 0.25 0.42 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 643.00 0.78 1.33 100.0 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 22415.22 27.14 46.30 56.37 RNY1-201 misc RNA GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 6887.00 2.27 14.22 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 2855.00 0.94 5.90 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 5240.00 1.73 10.82 100.0 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 9254.97 3.05 19.12 18.18 RNA5SP202-201 rRNA pseudogene GM12878 (Cell line)