ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 36316.00 12.00 75.01 91.36 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 68083.00 22.49 140.62 100.0 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 8444.00 2.79 17.44 44.27 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 1921.00 0.63 3.97 100.0 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 2641.51 9.90 5.46 39.85 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 620.00 2.32 1.28 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 682.00 2.56 1.41 74.29 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 963.00 3.61 1.99 67.06 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 119.00 0.45 0.25 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 450.00 1.69 0.93 40.65 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 805.00 3.02 1.66 38.74 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 102.51 0.38 0.21 15.32 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 629.00 2.36 1.30 51.47 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 389.00 1.46 0.80 100.0 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 715.00 2.68 1.48 87.95 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 4400.00 16.49 9.09 67.71 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 344.00 1.29 0.71 39.31 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 918.00 3.44 1.90 76.18 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 2245.00 8.42 4.64 78.72 RNU5A-1-201 snRNA GM12878 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 64.00 0.86 0.13 100.0 SNORD104-201 snoRNA GM12878 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 820.00 11.03 1.69 100.0 SNORD104-201 snoRNA GM12878 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 5.00 50.00 0.01 100.0 SNORD115-9-201 snoRNA GM12878 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 16950.00 18.91 35.01 74.95 RNA5SP358-201 rRNA pseudogene GM12878 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 3172.00 1.06 6.55 86.79 RNA5SP145-201 rRNA pseudogene GM12878 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 35.00 14.52 0.07 100.0 Y_RNA.105-201 misc RNA GM12878 (Cell line)