ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 3220.00 1.73 6.65 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 103518.00 41.48 213.80 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 21328.00 8.55 44.05 60.95 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 73357.00 34.61 151.51 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 3253.00 2.10 6.72 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 129.00 0.08 0.27 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 10465.00 6.75 21.61 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 43400.00 27.98 89.64 89.54 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 11921.00 7.69 24.62 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 41479.00 26.68 85.67 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 23701.00 16.40 48.95 49.85 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 11521.00 9.56 23.80 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 242.00 2.17 0.50 68.95 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 1108.00 9.93 2.29 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 33.00 0.30 0.07 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 2515.00 22.54 5.19 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 1287.00 0.34 2.66 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 97.00 2.05 0.20 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 1571.00 14.08 3.24 94.35 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 3537.00 31.69 7.31 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 94.00 0.84 0.19 5.65 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 7847.00 8.84 16.21 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 7327.00 8.25 15.13 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 131.00 3.35 0.27 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 31823.00 72.46 65.73 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA GM12878 (Cell line)