ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 24894.00 6.53 51.42 86.29 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 8686.00 2.28 17.94 38.96 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 33069.00 8.67 68.30 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 2391.00 0.63 4.94 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 46.00 10.04 0.10 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 56865.00 19.39 117.45 97.01 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 54.00 0.87 0.11 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 642.00 10.33 1.33 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 911.00 6.50 1.88 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 14353.00 9.23 29.64 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 58352.00 19.90 120.52 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 32984.00 11.25 68.12 78.58 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 169.00 0.64 0.35 9.39 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 1631.00 6.14 3.37 94.06 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 3894.00 11.01 8.04 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 9948.00 2.96 20.55 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 36938.00 11.00 76.29 67.69 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 119.00 0.40 0.25 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 3928.00 11.63 8.11 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 3503.00 1.24 7.24 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 25552.00 13.77 52.77 86.58 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 471.00 0.25 0.97 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 2532.00 1.36 5.23 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 4246.00 2.29 8.77 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 7938.00 4.28 16.40 70.82 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)