ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 199.00 1.39 0.41 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 9768.00 3.46 20.17 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 1733.00 0.61 3.58 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 18359.00 6.50 37.92 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 5260.00 1.86 10.86 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 32.00 0.01 0.07 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 2013.00 0.71 4.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 385.00 0.10 0.80 62.7 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 975.00 0.26 2.01 64.4 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 16732.00 4.45 34.56 97.08 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 1864.00 3.10 3.85 47.92 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 252.00 40.32 0.52 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 112.00 3.05 0.23 72.26 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 56.00 51.85 0.12 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 488.00 0.27 1.01 21.53 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 1779.00 0.99 3.67 78.47 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 34937.00 19.47 72.16 74.3 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 1218.00 5.03 2.52 46.42 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 5221.27 21.54 10.78 78.75 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 2133.59 8.80 4.41 30.19 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 9624.00 46.51 19.88 93.78 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 18.00 0.03 0.04 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 13666.00 5.50 28.23 61.77 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 1754.00 2.47 3.62 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 8987.00 2.36 18.56 84.96 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA GM12878 (Cell line)