ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 2297.00 0.39 4.74 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 6253.00 1.05 12.91 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 1319.00 2.35 2.72 100.0 ZFAS1-242 lncRNA GM12878 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 51297.00 91.39 105.95 100.0 ZFAS1-242 lncRNA GM12878 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 2657.00 34.16 5.49 100.0 ENST00000837997 lncRNA GM12878 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 1771.00 22.77 3.66 100.0 ENST00000837997 lncRNA GM12878 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 6594.00 74.12 13.62 85.32 ENST00000839036 lncRNA GM12878 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 1214.00 13.55 2.51 100.0 ENST00000849527 lncRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 2909.00 2.76 6.01 94.54 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 9393.00 8.90 19.40 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 577.00 0.66 1.19 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 16225.00 71.94 33.51 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 20.00 0.09 0.04 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 804.00 10.57 1.66 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 1403.00 2.49 2.90 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 619.00 3.59 1.28 64.88 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 2057.00 2.37 4.25 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 36.00 3.88 0.07 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 3314.00 5.51 6.84 95.5 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 3131.00 5.21 6.47 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 7127.00 11.85 14.72 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 26356.00 39.39 54.44 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 16823.00 4.41 34.75 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 70345.00 18.45 145.29 90.07 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 3211.00 0.84 6.63 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)