ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 1152.00 1.46 2.38 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 8528.00 32.86 17.61 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 16.00 0.06 0.03 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 3983.00 15.35 8.23 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 2220.00 51.31 4.59 100.0 ENST00000773843 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 423.00 0.02 0.87 100.0 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 540673.00 23.11 1116.70 81.39 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 1781690.00 76.14 3679.88 98.93 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 4451.00 0.07 9.19 100.0 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 6031325.00 95.37 12457.02 96.28 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 336.00 0.01 0.69 100.0 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 531.65 0.01 1.10 55.67 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 1180.85 0.02 2.44 70.75 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 704.93 0.01 1.46 29.38 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 13046.00 0.21 26.95 94.09 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 1213.00 0.02 2.51 100.0 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 8056.00 51.23 16.64 100.0 ENST00000778783 lncRNA GM12878 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 2188831.00 90.28 4520.78 95.21 MIR155HG-205 lncRNA GM12878 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 24624.00 13.31 50.86 100.0 ENST00000785178 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 1946.00 4.17 4.02 41.43 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 12668.00 27.15 26.16 100.0 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 2751.00 5.90 5.68 68.69 ENST00000786284 lncRNA GM12878 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 163536.00 79.46 337.77 94.45 ENST00000788343 lncRNA GM12878 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 37745.98 18.01 77.96 42.61 ENST00000797550 lncRNA GM12878 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 22078.35 10.54 45.60 24.93 ENST00000797550 lncRNA GM12878 (Cell line)