ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 102000.00 48.67 210.67 99.71 ENST00000797550 lncRNA GM12878 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 502593.00 80.51 1038.05 95.7 MIR181A1HG-212 lncRNA GM12878 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 6401.00 1.03 13.22 100.0 MIR181A1HG-212 lncRNA GM12878 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 37966.00 71.98 78.41 100.0 C19orf48P-218 lncRNA GM12878 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 7014.00 13.30 14.49 100.0 C19orf48P-218 lncRNA GM12878 (Cell line)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 2.00 0.49 0.00 66.67 SNHG18-220 lncRNA GM12878 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 1341.00 16.01 2.77 100.0 ENST00000817026 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 1506.00 4.00 3.11 80.02 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 1327.00 3.52 2.74 100.0 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 294.61 0.78 0.61 43.91 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 1046.29 2.78 2.16 61.91 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 1060.00 2.81 2.19 100.0 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 1820.00 4.83 3.76 98.33 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 553.64 1.47 1.14 44.33 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 796.03 2.11 1.64 35.36 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 3854.91 10.23 7.96 43.01 ENST00000823279 lncRNA GM12878 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 4610.44 12.24 9.52 50.5 ENST00000823801 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 262319.00 22.18 541.79 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 2456.00 0.21 5.07 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 6286.00 0.53 12.98 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 886522.00 74.95 1831.01 100.0 GAS5-377 lncRNA GM12878 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 114.00 73.55 0.24 100.0 MIR205HG-245 lncRNA GM12878 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 1035.00 13.09 2.14 100.0 TAF12-DT-204 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 564122.00 94.75 1165.13 99.93 ZFAS1-238 lncRNA GM12878 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 1019.00 0.17 2.10 100.0 ZFAS1-238 lncRNA GM12878 (Cell line)