ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 35394.00 11.08 73.10 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 1694.00 0.53 3.50 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 1893.00 0.59 3.91 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 2192.12 0.69 4.53 20.47 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 9159.32 2.87 18.92 82.52 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 1016.65 0.32 2.10 25.13 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 756.26 0.24 1.56 25.76 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 228209.00 71.45 471.34 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 5579.54 1.75 11.52 88.07 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 953.00 86.95 1.97 100.0 ENST00000756452 lncRNA GM12878 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 283.00 1.01 0.58 100.0 ENST00000760093 lncRNA GM12878 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 48.00 0.17 0.10 100.0 ENST00000760093 lncRNA GM12878 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 843.00 79.01 1.74 98.14 SNHG14-356 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 6493.00 7.83 13.41 94.76 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 2133.00 2.57 4.41 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_397_430_+ 397–430 314.00 0.38 0.65 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 3762.00 4.54 7.77 57.51 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_307_324_+ 307–324 32337.00 38.99 66.79 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 19981.00 96.77 41.27 100.0 EHBP1-AS1-210 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 2154.00 18.26 4.45 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 4002.00 33.92 8.27 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 82.00 0.69 0.17 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 3128.00 3.95 6.46 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 112.00 0.14 0.23 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 14607.00 18.46 30.17 57.15 ENST00000771298 lncRNA GM12878 (Cell line)