ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 1.00 16.67 0.00 100.0 MEG8-240 lncRNA GM12878 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 1.00 2.94 0.00 100.0 SNHG14-306 lncRNA GM12878 (Cell line)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 1.00 2.94 0.00 100.0 SNHG14-306 lncRNA GM12878 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 1039.00 3.37 2.15 100.0 ENST00000666735 lncRNA GM12878 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 7446.00 24.12 15.38 100.0 ENST00000666735 lncRNA GM12878 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 26.79 9.74 0.06 23.92 SNHG14-312 lncRNA GM12878 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 81.76 29.73 0.17 73.0 SNHG14-312 lncRNA GM12878 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 3.00 1.09 0.01 100.0 SNHG14-312 lncRNA GM12878 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 3.00 50.00 0.01 100.0 MEG8-244 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 4827.00 0.21 9.97 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 12.00 0.00 0.02 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 31502.00 1.36 65.06 99.43 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 91.69 0.00 0.19 53.93 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1420.00 0.06 2.93 92.57 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 265768.00 11.44 548.91 97.5 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 275.00 0.01 0.57 39.45 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 131957.00 5.68 272.54 99.84 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 13571.00 0.58 28.03 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 989083.00 42.56 2042.84 98.47 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 82.00 0.00 0.17 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 4413.00 0.19 9.11 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 6295.00 0.27 13.00 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1099.00 0.05 2.27 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 72.00 0.00 0.15 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 91.00 0.00 0.19 100.0 SNHG1-248 lncRNA GM12878 (Cell line)