ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 2717.00 2.25 5.61 100.0 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 27359.00 22.64 56.51 25.93 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 413.00 0.34 0.85 100.0 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 3324.00 5.97 6.87 87.47 LINC01962-202 lncRNA GM12878 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 10021.00 18.00 20.70 100.0 LINC01962-202 lncRNA GM12878 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 6194.00 11.13 12.79 100.0 LINC01962-202 lncRNA GM12878 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 167.00 10.61 0.34 98.24 SNHG14-241 lncRNA GM12878 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 2.00 50.00 0.00 100.0 MEG8-228 lncRNA GM12878 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 7.00 1.40 0.01 100.0 SNHG14-254 lncRNA GM12878 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 9.00 1.40 0.02 100.0 SNHG14-261 lncRNA GM12878 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 163.00 25.31 0.34 94.77 SNHG14-261 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 544.00 0.67 1.12 100.0 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 3193.00 3.94 6.59 100.0 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 25365.00 31.26 52.39 84.76 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 715.00 13.86 1.48 85.83 MIR99AHG-262 lncRNA GM12878 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 3464.00 67.17 7.15 100.0 MIR99AHG-262 lncRNA GM12878 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 12.00 17.91 0.02 100.0 SNHG14-270 lncRNA GM12878 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 2.00 0.37 0.00 100.0 SNHG14-275 lncRNA GM12878 (Cell line)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 47.00 2.22 0.10 100.0 MIR9-2HG-225 lncRNA GM12878 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 1819.00 85.76 3.76 95.69 MIR9-2HG-225 lncRNA GM12878 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 6.00 2.29 0.01 100.0 SNHG14-278 lncRNA GM12878 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 1.00 0.38 0.00 100.0 SNHG14-278 lncRNA GM12878 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 7128.00 89.68 14.72 100.0 SNHG17-252 lncRNA GM12878 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 33.00 3.20 0.07 36.26 SNHG14-288 lncRNA GM12878 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 837.00 81.18 1.73 98.24 SNHG14-288 lncRNA GM12878 (Cell line)