ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 186940.00 8.04 386.10 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 5837.00 0.25 12.06 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 616.00 0.03 1.27 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 517784.00 22.28 1069.42 97.92 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1068.00 0.05 2.21 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 8158.00 0.35 16.85 90.22 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 2068.00 0.09 4.27 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 135.00 0.01 0.28 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 38054.00 1.64 78.60 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1845.00 0.08 3.81 92.48 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 85.07 0.00 0.18 50.04 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 294.00 0.01 0.61 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 493.00 0.02 1.02 63.21 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 377.00 0.02 0.78 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 147.00 0.01 0.30 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 710.00 0.03 1.47 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 397.00 23.38 0.82 100.0 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 394.00 23.20 0.81 97.52 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 529.00 31.15 1.09 95.14 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 631.00 0.21 1.30 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 44574.92 15.11 92.06 24.32 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 77.00 0.03 0.16 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 783.00 0.27 1.62 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 173045.33 58.65 357.41 79.22 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 6275.00 2.13 12.96 61.99 SNHG5-273 lncRNA GM12878 (Cell line)