ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 23.00 0.01 0.05 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 68165.00 17.46 140.79 81.2 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 14981.00 3.84 30.94 63.99 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 9629.00 2.47 19.89 87.76 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 5759.28 1.48 11.90 69.65 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 80533.00 20.63 166.33 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 282.00 0.07 0.58 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 261.00 0.07 0.54 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 171.00 0.04 0.35 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 7374.60 1.89 15.23 40.95 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 3778.18 0.97 7.80 42.72 U2.3-201 snRNA GM12878 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1277.00 0.49 2.64 100.0 U2.6-201 snRNA GM12878 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 3550.00 1.77 7.33 64.52 ENST00000619323 lncRNA GM12878 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 192134.00 95.96 396.83 98.62 ENST00000619323 lncRNA GM12878 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 300.00 22.99 0.62 100.0 SCARNA4-202 scaRNA GM12878 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 917.00 14.14 1.89 100.0 ENST00000625572 miRNA GM12878 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1178.00 29.38 2.43 100.0 ENST00000628177 snoRNA GM12878 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 215496.00 92.10 445.08 100.0 ENST00000630615 snoRNA GM12878 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 4750.00 24.59 9.81 100.0 DMRT2-209 protein coding GM12878 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 10125.00 52.42 20.91 100.0 DMRT2-209 protein coding GM12878 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1299.00 27.86 2.68 100.0 SNORD98-201 snoRNA GM12878 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 2134.00 45.76 4.41 100.0 SNORD98-201 snoRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 474952.28 37.49 980.96 41.85 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 502.86 0.04 1.04 46.82 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 89.00 0.01 0.18 100.0 MIR106AHG-201 lncRNA GM12878 (Cell line)