ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1045.00 13.81 2.16 100.0 ENST00000602478 lncRNA GM12878 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 16.00 14.95 0.03 100.0 PPFIA1P1-201 processed pseudogene GM12878 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 28117.00 97.82 58.07 100.0 MIR98-201 miRNA GM12878 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 1.00 50.00 0.00 100.0 SNORD113-5-201 snoRNA GM12878 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 15937.00 95.82 32.92 100.0 MIR15A-201 miRNA GM12878 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 2537.00 34.27 5.24 100.0 SNHG21-206 retained intron GM12878 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 1292.00 48.19 2.67 100.0 SNORD11B-201 snoRNA GM12878 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1909.00 62.37 3.94 100.0 SNORD91B-201 snoRNA GM12878 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 18246.00 77.07 37.69 95.35 SNORD91A-201 snoRNA GM12878 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 3363.00 42.20 6.95 93.05 MIR486-1-201 miRNA GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 1616.00 1.82 3.34 29.3 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 2512.00 2.82 5.19 100.0 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 19493.00 21.89 40.26 100.0 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 48754.00 54.76 100.70 98.84 NOP56-219 retained intron GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 1120.00 2.26 2.31 46.19 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 156.79 0.32 0.32 53.51 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 294.00 0.59 0.61 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 2270.00 4.57 4.69 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 6914.00 13.93 14.28 100.0 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1959.00 3.95 4.05 63.62 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 138.29 0.28 0.29 47.2 RNA5-8SN2-201 rRNA GM12878 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 9791.00 93.63 20.22 100.0 MIR7974-201 miRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 8782.00 2.25 18.14 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2887.08 0.74 5.96 34.91 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 89281.00 22.87 184.40 98.88 U2.3-201 snRNA GM12878 (Cell line)