ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 23921.00 98.39 49.41 100.0 DENND3-221 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 4.00 0.00 0.01 30.77 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 173.00 0.07 0.36 79.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 994.00 0.39 2.05 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 9.00 0.00 0.02 69.23 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 43.00 0.02 0.09 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1459.00 0.58 3.01 71.52 WDR74-204 protein coding GM12878 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 13.00 0.01 0.03 100.0 WDR74-204 protein coding GM12878 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 11516.00 65.22 23.79 100.0 HSPA8-211 retained intron GM12878 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 482.00 2.68 1.00 100.0 SCARNA9-201 lncRNA GM12878 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 339.00 0.20 0.70 100.0 TAF1D-215 retained intron GM12878 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 159688.00 96.28 329.82 100.0 TAF1D-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 1059.00 6.35 2.19 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 9022.00 54.11 18.63 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 108.00 0.65 0.22 100.0 HSPA8-215 retained intron GM12878 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1860.00 29.25 3.84 100.0 RPS2-215 retained intron GM12878 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 34752.00 88.02 71.78 89.08 ENST00000548801 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 6948.00 51.17 14.35 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 704.00 5.18 1.45 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 115.00 0.85 0.24 100.0 ENST00000554988 lncRNA GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 2591.00 57.36 5.35 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 130.00 2.88 0.27 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 230.00 5.09 0.48 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 111.00 2.46 0.23 100.0 SNHG14-220 retained intron GM12878 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 16217.00 99.74 33.49 100.0 TEKT4P2-201 transcribed unprocessed pseudogene GM12878 (Cell line)