ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 38231.00 94.88 78.96 100.0 COX7C-203 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 50.00 0.01 0.10 100.0 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 1376.00 0.19 2.84 58.08 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 403903.83 56.79 834.22 60.74 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 326434.48 45.90 674.21 47.28 RACK1-229 protein coding GM12878 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 220721.00 12.24 455.87 54.3 RACK1-230 retained intron GM12878 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 1541379.00 85.48 3183.55 90.41 RACK1-230 retained intron GM12878 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 3004.00 13.25 6.20 100.0 RNA5SP486-201 rRNA pseudogene GM12878 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3170.00 90.52 6.55 100.0 SCARNA5-201 scaRNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 848.00 0.17 1.75 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 6139.00 1.22 12.68 68.07 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 570.00 0.11 1.18 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 10933.00 2.17 22.58 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1009.00 0.20 2.08 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 281801.00 55.81 582.03 98.99 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 24310.00 4.81 50.21 95.57 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 71.00 0.01 0.15 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 2913.00 0.58 6.02 65.09 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 5459.00 1.08 11.27 88.72 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 44245.00 8.76 91.38 100.0 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 41062.00 8.13 84.81 70.07 RNY4-201 misc RNA GM12878 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 98133.00 76.90 202.68 87.71 MIR3142HG-201 lncRNA GM12878 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 443.00 51.63 0.91 100.0 SNHG6-204 retained intron GM12878 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 60730.00 51.78 125.43 100.0 MIR151A-201 miRNA GM12878 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 43016.00 36.68 88.84 80.91 MIR151A-201 miRNA GM12878 (Cell line)