ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 80786.00 90.91 166.85 99.21 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1258.00 1.42 2.60 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 184.00 0.21 0.38 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 20.00 0.02 0.04 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 2467.00 2.78 5.10 100.0 RPL4-202 retained intron GM12878 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 442.00 0.91 0.91 100.0 ENST00000563103 lncRNA GM12878 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 49628.00 78.17 102.50 100.0 RPL4-207 retained intron GM12878 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 280.00 0.44 0.58 100.0 RPL4-207 retained intron GM12878 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 75011.00 48.37 154.93 89.83 ENST00000565336 lncRNA GM12878 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 49064.00 31.64 101.34 89.0 ENST00000565336 lncRNA GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1035.00 4.80 2.14 100.0 RBMX-210 retained intron GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 22.00 0.10 0.05 100.0 RBMX-210 retained intron GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 422.00 1.96 0.87 100.0 RBMX-210 retained intron GM12878 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 18388.00 85.35 37.98 99.2 RBMX-210 retained intron GM12878 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 12209.00 63.61 25.22 100.0 RPL4-214 retained intron GM12878 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 817.00 4.26 1.69 100.0 RPL4-214 retained intron GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 23242.89 28.56 48.01 52.33 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 25991.27 31.94 53.68 63.64 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 1544.00 1.90 3.19 100.0 POLG-DT-202 lncRNA GM12878 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 17.00 0.03 0.04 100.0 ENST00000570843 lncRNA GM12878 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 5069.00 8.43 10.47 100.0 ENST00000570843 lncRNA GM12878 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 231.00 36.67 0.48 100.0 MIR497HG-207 lncRNA GM12878 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 136883.00 98.70 282.72 99.25 MIR22HG-212 lncRNA GM12878 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 61019.00 66.52 126.03 69.32 SNORD53B-201 snoRNA GM12878 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 642.00 0.70 1.33 38.96 SNORD53B-201 snoRNA GM12878 (Cell line)